choppa.align.AlignFactory
=========================

.. currentmodule:: choppa.align

.. autoclass:: AlignFactory
   :members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~AlignFactory.__init__
      ~AlignFactory.align_fitness
      ~AlignFactory.alignment_idx_to_original_idx
      ~AlignFactory.complex_get_seq
      ~AlignFactory.complex_get_seqidcs
      ~AlignFactory.fill_aligned_fitness
      ~AlignFactory.fitness_get_seq
      ~AlignFactory.fitness_get_seqidcs
      ~AlignFactory.fitness_reset_keys
      ~AlignFactory.get_alignment
      ~AlignFactory.get_fitness_alignment_shift_dict
      ~AlignFactory.validate_alignment